lncRNA expression in Fibroblasts during Fibrosis

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Description

Involves developing an MySQL database and simple web interface to allow exploration of the lncRNA expression data relevant to "Systematic Analysis of Protein-Coding and Long Non-Coding RNA Genes in Fibroblasts and During Fibrosis". See a similar example here: http://c-it-loci.uni-frankfurt.de/region/CIL_000001

R

Data Integration, Data Mining, R-Shiny, Snakemake

Project Stage

Late

Avg. Hours / Week

8

Project Provider

Shizuka Uchida, PhD

Commitment (Months)

2

Spots Open

1

Project Lead

Henry Miller

Publication if successful?

Yes

Trainee authorship criteria (if applicable)

The BRN trainees will be co-authors.

NOTE: Web applications built in R-shiny

Required Skill Assessments

Basic Data Science Web Development

RNA-Seq Analysis

R for Data Science

R Programming