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Open Projects

Last updated: Mar 14, 2023

Predict Patient Response to Cancer Immunotherapy with Multi-Omics

Multi-View Learning of Multi-Omics to Predict Patient Response to Cancer Immunotherapy

Machine Learning, Variant analysis, Data Integration

Python

Single cell A-to-I RNA editing

Developing a method for analyzing A-to-I editing in intronic scRNA-Seq sequences. Using this to identify novel cell states.

scRNA-Seq, Linux, Snakemake/NextFlow, Method development

Bash, R, Snakemake or NextFlow

Predicting Functional Phosphosites with MAVE

Predict Functional Phosphosites Using MAVE Datasets and Machine-Learning

Machine Learning, Method development

Python

Transcriptomic database for Crohn's Disease

Building an expression database for crohn's disease

RNA-Seq, Data Mining, R-Shiny

R

Type II Diabetes RNA atlas

Building an expression database for type 2 diabetes

RNA-Seq, Data mining, R-Shiny

R

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