Sep 4, 2022
Single cell A-to-I RNA editing
Developing a method for analyzing A-to-I editing in intronic scRNA-Seq sequences. Using this to identify novel cell states.
scRNA-Seq, Linux, Snakemake/NextFlow, Method development
Bash, R, Snakemake or NextFlow
BRCA1-NRF2 relationship in health and disease
Understanding the interplay of BRCA1 and NRF2 in driving breast cancer metastasis, normal breast development, and Ewing sarcoma differentiation.
RNA-Seq, ChIP-Seq, Data Mining, Data Integration
RLDelta involves (1) developing an atlas of differential R-loop dynamics and (b) developing a software package for the differential analysis of R-loop data.
Data Mining, Data Integration, Software development, R-Shiny, Reactive Programming, ChIP-Seq
Bioinformatics Research Network
This project is attempting to optimize the network, track progress, design a web platform, and ultimate publish the results.
API development, REACT.js, Data Integration, Linux